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Crossfit analysis: a novel method to characterize the dynamics of induced plant responses

Jansen, J.J. and Van Dam, N.M. and Hoefsloot, H.C.J. and Smilde, A.K. (2009) Crossfit analysis: a novel method to characterize the dynamics of induced plant responses. BMC Bioinformatics, 10, 425-. ISSN 1471-2105.

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Official URL: http://dx.doi.org/10.1186/1471-2105-10-425

Abstract

Background Many plant species show induced responses that protect them against exogenous attacks. These responses involve the production of many different bioactive compounds. Plant species belonging to the Brassicaceae family produce defensive glucosinolates, which may greatly influence their favorable nutritional properties for humans. Each responding compound may have its own dynamic profile and metabolic relationships with other compounds. The chemical background of the induced response is therefore hi Results This study therefore aims to describe the dynamics of the glucosinolate response, measured at three time points after induction in a feral Brassica, by a three-faceted approach, based on Principal Component Analysis. First the large-scale aspects of the response are described in a 'global model' and then each time-point in the experiment is individually described in 'local models' that focus on phenomena that occur at specific moments in time. Although each local model describes the variation am Conclusions Each element of the described analysis approach reveals different aspects of the response. The crossfit shows that smaller dynamic changes may occur in the response that are overlooked by global models, as illustrated by the analysis of a metabolic profiling dataset of the same samples.

Item Type:Article
Institutes:Nederlands Instituut voor Ecologie (NIOO)
ID Code:6193
Deposited On:10 Jun 2010 02:00
Last Modified:31 Mar 2014 10:29

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